Variant report
| Variant | rs17157216 |
|---|---|
| Chromosome Location | chr7:103548787-103548788 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10231405 | 0.86[EUR][1000 genomes] |
| rs10245317 | 0.82[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs10272697 | 0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs10274911 | 0.86[EUR][1000 genomes] |
| rs12670967 | 0.84[EUR][1000 genomes] |
| rs1476927 | 0.94[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs1476928 | 0.94[CEU][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs17157337 | 0.86[EUR][1000 genomes] |
| rs17269500 | 0.94[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2058503 | 0.85[EUR][1000 genomes] |
| rs2058504 | 0.86[EUR][1000 genomes] |
| rs2299401 | 0.85[EUR][1000 genomes] |
| rs2299403 | 0.86[EUR][1000 genomes] |
| rs41434053 | 0.90[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs56406130 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59078884 | 0.87[EUR][1000 genomes] |
| rs6465945 | 0.83[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs73183745 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73183748 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73183749 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73183755 | 0.86[EUR][1000 genomes] |
| rs7797395 | 0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1843940 | chr7:103421702-103590285 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv523466 | chr7:103547135-103567525 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17157216 | CYP3A4 | cis | cerebellum | SCAN |
| rs17157216 | COPS6 | cis | cerebellum | SCAN |
| rs17157216 | AP1S1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103548400-103549600 | Strong transcription | K562 | blood |
| 2 | chr7:103548400-103549800 | Strong transcription | HepG2 | liver |
