Variant report

Variant	rs17157217
Chromosome Location	chr10:45398714-45398715
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45398629..45401075-chr10:45411159..45413605,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1332624	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1332626	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17157212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58414517	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45391000-45399000	Weak transcription	Primary T cells from cord blood	blood
2	chr10:45395600-45398800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:45395800-45399200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:45395800-45399400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:45397400-45399600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:45397600-45399200	Enhancers	Fetal Brain Male	brain
7	chr10:45397800-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:45397800-45399400	Enhancers	Fetal Brain Female	brain
9	chr10:45397800-45399600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:45398000-45399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:45398000-45399400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:45398000-45399600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:45398000-45399600	Enhancers	Fetal Muscle Leg	muscle
14	chr10:45398200-45399200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:45398400-45398800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:45398400-45398800	Enhancers	Fetal Intestine Small	intestine
17	chr10:45398400-45399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:45398400-45399200	Enhancers	Fetal Stomach	stomach
19	chr10:45398400-45399400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:45398400-45399400	Enhancers	Pancreas	Pancrea
21	chr10:45398400-45399600	Enhancers	Fetal Thymus	thymus
22	chr10:45398400-45400800	Enhancers	Fetal Kidney	kidney
23	chr10:45398600-45398800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:45398600-45398800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:45398600-45398800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr10:45398600-45399000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:45398600-45399000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:45398600-45399200	Enhancers	Right Atrium	heart
29	chr10:45398600-45399400	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:45398600-45403400	Weak transcription	Fetal Lung	lung
31	chr10:45398600-45406800	Weak transcription	Right Ventricle	heart

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