Variant report

Variant	rs17157352
Chromosome Location	chr11:62265710-62265711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62263893..62266128-chr11:62309249..62311326,26	MCF-7	breast:
2	chr11:62264769..62270336-chr11:62318540..62328182,11	MCF-7	breast:
3	chr11:62252800..62254625-chr11:62265027..62267271,2	K562	blood:
4	chr11:62264606..62266453-chr11:62274794..62277331,2	MCF-7	breast:
5	chr11:62263870..62269326-chr11:62305524..62310974,8	MCF-7	breast:
6	chr11:62264782..62267119-chr11:62267756..62269334,2	MCF-7	breast:
7	chr11:62261921..62263896-chr11:62265298..62268130,3	K562	blood:
8	chr11:62263349..62265762-chr11:62273214..62274854,2	K562	blood:
9	chr11:62261921..62263712-chr11:62265298..62267732,2	K562	blood:
10	chr11:62262841..62270580-chr11:62309307..62316157,15	MCF-7	breast:
11	chr11:62264064..62269761-chr11:62316551..62324170,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124942	Chromatin interaction
ENSG00000257058	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11231123	1.00[EUR][1000 genomes]
rs11828907	1.00[EUR][1000 genomes]
rs34320415	1.00[EUR][1000 genomes]
rs3888584	1.00[EUR][1000 genomes]
rs41346047	1.00[EUR][1000 genomes]
rs41427449	1.00[EUR][1000 genomes]
rs57799986	1.00[EUR][1000 genomes]
rs58505493	1.00[EUR][1000 genomes]
rs58792209	1.00[EUR][1000 genomes]
rs59143369	1.00[EUR][1000 genomes]
rs73483978	1.00[EUR][1000 genomes]
rs73500265	1.00[EUR][1000 genomes]
rs73500293	1.00[EUR][1000 genomes]
rs73502105	1.00[EUR][1000 genomes]
rs73502120	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv832180	chr11:62201605-62364828	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv532284	chr11:62220043-62630253	Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1401 gene(s)	inside rSNPs	diseases
5	nsv345	chr11:62225251-62270254	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv897621	chr11:62230309-62290170	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3584599	chr11:62262742-62398050	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62247800-62266600	Weak transcription	Esophagus	oesophagus
2	chr11:62247800-62272600	Weak transcription	Aorta	Aorta
3	chr11:62257400-62267000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:62257400-62267000	Weak transcription	Fetal Stomach	stomach
5	chr11:62257600-62267000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:62258200-62266800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:62258400-62267000	Weak transcription	Right Atrium	heart
8	chr11:62259200-62267000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:62263400-62271800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:62263600-62267200	Enhancers	HepG2	liver
11	chr11:62264200-62265800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:62264200-62265800	Enhancers	A549	lung
13	chr11:62264200-62266400	Enhancers	Fetal Intestine Small	intestine
14	chr11:62264400-62265800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:62264400-62265800	Enhancers	NHDF-Ad	bronchial
16	chr11:62264400-62265800	Enhancers	NHLF	lung
17	chr11:62264400-62266000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:62264600-62265800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:62264600-62265800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:62264600-62265800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:62264600-62265800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:62264600-62265800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:62264600-62267000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:62264600-62267000	Enhancers	HMEC	breast
25	chr11:62264600-62267000	Enhancers	NHEK	skin
26	chr11:62264600-62267200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:62264600-62267200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:62264600-62268600	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:62264800-62267600	Weak transcription	Ovary	ovary
30	chr11:62265000-62266600	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:62265000-62267000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:62265000-62267000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:62265000-62267200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:62265000-62267200	Weak transcription	Brain Anterior Caudate	brain
35	chr11:62265000-62267200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:62265000-62267200	Weak transcription	HSMMtube	muscle
37	chr11:62265000-62267400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:62265000-62268600	Weak transcription	Liver	Liver
39	chr11:62265000-62269400	Weak transcription	Brain Angular Gyrus	brain
40	chr11:62265000-62271800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:62265200-62266800	Weak transcription	Adipose Nuclei	Adipose
42	chr11:62265200-62266800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:62265200-62266800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:62265200-62267000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:62265200-62267000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:62265200-62267000	Weak transcription	Brain Substantia Nigra	brain
47	chr11:62265200-62267000	Weak transcription	Fetal Heart	heart
48	chr11:62265200-62267000	Weak transcription	NH-A	brain
49	chr11:62265200-62267200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:62265200-62267400	Weak transcription	Brain Hippocampus Middle	brain

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