Variant report

Variant	rs17157903
Chromosome Location	chr7:103628036-103628037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10244615	0.88[MEX][hapmap]
rs10487180	0.88[MEX][hapmap]
rs10953399	0.88[MEX][hapmap]
rs10953400	0.81[ASN][1000 genomes]
rs11772975	0.86[MEX][hapmap]
rs12533473	0.87[ASN][1000 genomes]
rs12537578	0.89[ASN][1000 genomes]
rs12667675	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs35898997	0.89[ASN][1000 genomes]
rs58041247	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58095345	0.89[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Multiple sclerosis (age of onset)	19010793	GWAS catalog

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs17157903	ALKBH4	cis	parietal	SCAN
rs17157903	PRKAR2B	cis	parietal	SCAN
rs17157903	PILRB	cis	cerebellum	SCAN
rs17157903	SLC26A3	cis	parietal	SCAN
rs17157903	VGF	cis	parietal	SCAN
rs17157903	MLL5	cis	parietal	SCAN
rs17157903	HBP1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103626600-103629000	Active TSS	HepG2	liver
2	chr7:103628000-103628200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:103628000-103628200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:103628000-103628400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:103628000-103628600	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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