Variant report

Variant	rs17158165
Chromosome Location	chr15:83567948-83567949
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11853742	1.00[EUR][1000 genomes]
rs12591165	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12591237	1.00[EUR][1000 genomes]
rs1272727	1.00[YRI][hapmap]
rs3784380	0.88[CHB][hapmap]
rs58329615	1.00[EUR][1000 genomes]
rs66603627	1.00[EUR][1000 genomes]
rs66982382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522673	chr15:83565711-83570114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
2	chr15:83558400-83569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:83564200-83569400	Weak transcription	HepG2	liver
6	chr15:83564400-83568000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:83564400-83569400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:83564400-83569600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:83564600-83569400	Weak transcription	HSMM	muscle
11	chr15:83565400-83568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:83566000-83568000	Enhancers	HSMMtube	muscle
13	chr15:83566200-83568200	Enhancers	Liver	Liver
14	chr15:83566400-83568200	Genic enhancers	Pancreas	Pancrea
15	chr15:83566400-83568200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:83566600-83568000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:83566600-83568200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr15:83566800-83569600	Weak transcription	Gastric	stomach
19	chr15:83567000-83569200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:83567600-83570000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:83567800-83568200	Enhancers	Fetal Muscle Trunk	muscle
22	chr15:83567800-83568200	Enhancers	Fetal Muscle Leg	muscle
23	chr15:83567800-83568200	Enhancers	Left Ventricle	heart
24	chr15:83567800-83568200	Enhancers	Right Ventricle	heart
25	chr15:83567800-83570400	Enhancers	Psoas Muscle	Psoas

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