Variant report

Variant	rs17158257
Chromosome Location	chr15:83500319-83500320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:116661921..116663439-chr15:83498136..83501074,2	MCF-7	breast:
2	chr15:83497773..83500500-chr15:83501869..83504757,2	K562	blood:
3	chr15:83497018..83500985-chr15:83502247..83506806,4	MCF-7	breast:
4	chr15:83477460..83480587-chr15:83496112..83502372,6	K562	blood:
5	chr15:83495199..83497362-chr15:83499457..83501013,2	K562	blood:
6	chr15:83495862..83497428-chr15:83499513..83501800,2	K562	blood:
7	chr15:83478452..83480034-chr15:83499455..83501748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156232	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1108135	0.81[EUR][1000 genomes]
rs11259954	0.84[AMR][1000 genomes]
rs12592976	0.83[EUR][1000 genomes]
rs17158253	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17158267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17841165	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28698473	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55994896	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56108482	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57612574	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58229275	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60686632	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66978683	0.83[EUR][1000 genomes]
rs73443061	0.81[EUR][1000 genomes]
rs899747	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83479600-83504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:83479800-83504000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:83480000-83501600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:83480400-83500600	Weak transcription	Stomach Mucosa	stomach
5	chr15:83480400-83507000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:83481200-83507200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:83481400-83500800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:83481400-83507000	Strong transcription	Placenta	Placenta
9	chr15:83481600-83500800	Strong transcription	Fetal Thymus	thymus
10	chr15:83481600-83507000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:83481800-83506200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:83481800-83507000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr15:83481800-83507600	Strong transcription	Adipose Nuclei	Adipose
14	chr15:83482000-83506800	Strong transcription	Fetal Intestine Large	intestine
15	chr15:83482000-83507000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:83482200-83507000	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:83482800-83500400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:83482800-83506800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:83483200-83507400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:83484800-83505400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr15:83485200-83500600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:83485400-83500600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:83488400-83505000	Strong transcription	Fetal Stomach	stomach
24	chr15:83488800-83501800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:83489200-83500800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:83489200-83506800	Weak transcription	Fetal Brain Male	brain
27	chr15:83491000-83500600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:83491000-83500600	Strong transcription	HSMM	muscle
29	chr15:83491000-83508000	Strong transcription	Thymus	Thymus
30	chr15:83491200-83506400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:83491200-83507400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:83491400-83505000	Strong transcription	Spleen	Spleen
33	chr15:83491400-83506600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:83491400-83507400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:83491400-83507400	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:83491400-83508200	Strong transcription	Left Ventricle	heart
37	chr15:83491600-83500400	Strong transcription	Osteobl	bone
38	chr15:83491600-83500600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:83491800-83506000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:83491800-83507600	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:83492000-83500800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:83492000-83507400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:83492200-83500400	Strong transcription	Ovary	ovary
44	chr15:83492200-83500600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:83492200-83504200	Strong transcription	Lung	lung
46	chr15:83492200-83507400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr15:83492800-83506000	Strong transcription	Colonic Mucosa	Colon
48	chr15:83493000-83500600	Strong transcription	HUVEC	blood vessel
49	chr15:83493000-83507600	Strong transcription	Fetal Brain Female	brain
50	chr15:83493400-83501200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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