Variant report

Variant	rs17158262
Chromosome Location	chr7:110666631-110666632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17158079	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17158231	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs258973	1.00[CEU][hapmap]
rs258974	1.00[CEU][hapmap]
rs258977	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs258980	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs258981	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs258987	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs59490815	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6965289	0.91[EUR][1000 genomes]
rs73435139	0.96[EUR][1000 genomes]
rs7802324	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023596	chr7:109984459-110708071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539061	chr7:109984459-110708071	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv888973	chr7:110509579-110699652	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2758129	chr7:110523298-110787849	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2759554	chr7:110523298-110787849	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1033286	chr7:110588021-110990928	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv539063	chr7:110588021-110990928	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv931978	chr7:110607590-111092490	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1025987	chr7:110609568-111258501	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv888975	chr7:110613685-110677656	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv2830178	chr7:110645431-110778571	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1024477	chr7:110660006-110944477	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110654200-110667000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:110659600-110669400	Weak transcription	Fetal Lung	lung
3	chr7:110659800-110669200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:110660000-110669400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:110660800-110669800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:110661800-110670600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:110662400-110668000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr7:110662800-110667400	Enhancers	Fetal Thymus	thymus
9	chr7:110663600-110667200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr7:110663600-110670400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:110664200-110667600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:110664200-110667600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:110664200-110670600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:110664400-110667200	Enhancers	Fetal Intestine Large	intestine
15	chr7:110664400-110668400	Enhancers	Fetal Intestine Small	intestine
16	chr7:110664600-110669200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:110665000-110670800	Enhancers	Dnd41	blood
18	chr7:110665200-110668000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:110665600-110669400	Enhancers	Primary T cells from cord blood	blood
20	chr7:110665800-110667400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:110665800-110668000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:110665800-110668000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:110665800-110669200	Weak transcription	Thymus	Thymus
24	chr7:110666000-110667200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:110666000-110667400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:110666000-110667600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:110666000-110667800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:110666200-110667400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:110666400-110666800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr7:110666400-110666800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:110666400-110666800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:110666400-110667000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:110666400-110667000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:110666400-110667000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr7:110666400-110667800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr7:110666600-110666800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr7:110666600-110667200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:110666600-110667400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:110666600-110667600	Weak transcription	HepG2	liver

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