Variant report

Variant	rs17158456
Chromosome Location	chr11:63405317-63405318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17158455	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957254	0.85[YRI][hapmap]
rs480977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499942	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502017	1.00[YRI][hapmap]
rs502717	0.85[YRI][hapmap]
rs509932	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512073	1.00[YRI][hapmap]
rs512249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516068	1.00[YRI][hapmap]
rs518304	0.85[YRI][hapmap]
rs519374	0.85[YRI][hapmap]
rs538627	0.85[YRI][hapmap]
rs542124	0.85[YRI][hapmap]
rs565324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs569657	0.85[YRI][hapmap]
rs622400	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:63388800-63406400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:63390600-63409600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:63391200-63410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
8	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:63394000-63406000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:63394000-63409200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:63394200-63409400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:63394400-63406000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:63394600-63406000	Strong transcription	Adipose Nuclei	Adipose
14	chr11:63394800-63405600	Strong transcription	NHDF-Ad	bronchial
15	chr11:63395000-63426800	Strong transcription	Dnd41	blood
16	chr11:63395200-63406200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:63395400-63406200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:63397400-63409000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
21	chr11:63398800-63408400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:63398800-63409000	Weak transcription	Brain Germinal Matrix	brain
23	chr11:63398800-63409600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:63398800-63412400	Weak transcription	Pancreas	Pancrea
25	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:63399000-63408400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:63399000-63408800	Weak transcription	Colonic Mucosa	Colon
30	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
31	chr11:63399200-63407600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
33	chr11:63399600-63410600	Weak transcription	Right Ventricle	heart
34	chr11:63399800-63408800	Weak transcription	Fetal Intestine Large	intestine
35	chr11:63399800-63409000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:63399800-63410600	Weak transcription	Brain Substantia Nigra	brain
37	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
38	chr11:63400000-63408800	Weak transcription	Left Ventricle	heart
39	chr11:63400000-63409600	Weak transcription	Brain Angular Gyrus	brain
40	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:63400600-63408400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:63400600-63408800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:63400600-63409000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:63400600-63409000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:63400800-63407800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:63400800-63412400	Weak transcription	Aorta	Aorta
48	chr11:63401200-63405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:63401200-63408800	Weak transcription	Lung	lung
50	chr11:63401200-63409400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links