Variant report

Variant	rs17158964
Chromosome Location	chr7:84001060-84001061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10236082	0.95[ASN][1000 genomes]
rs10255354	0.94[ASN][1000 genomes]
rs10954752	0.95[ASN][1000 genomes]
rs10954753	0.95[ASN][1000 genomes]
rs11972641	0.95[ASN][1000 genomes]
rs12667787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12707647	0.92[ASN][1000 genomes]
rs13238916	0.95[ASN][1000 genomes]
rs13437800	0.92[ASN][1000 genomes]
rs13437801	0.94[ASN][1000 genomes]
rs16887703	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16887706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1974512	0.95[ASN][1000 genomes]
rs1987325	0.95[ASN][1000 genomes]
rs2158169	0.95[ASN][1000 genomes]
rs2189119	0.95[ASN][1000 genomes]
rs2372453	0.95[ASN][1000 genomes]
rs2372454	0.95[ASN][1000 genomes]
rs2522371	0.95[ASN][1000 genomes]
rs2681433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2681434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2681435	0.95[ASN][1000 genomes]
rs2706904	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706905	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2706916	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2888321	0.95[ASN][1000 genomes]
rs4728554	0.95[ASN][1000 genomes]
rs4732548	0.95[ASN][1000 genomes]
rs4732549	0.95[ASN][1000 genomes]
rs505758	0.90[CHB][hapmap];0.83[JPT][hapmap];0.99[ASN][1000 genomes]
rs519663	0.95[ASN][1000 genomes]
rs521595	0.95[ASN][1000 genomes]
rs524163	0.95[ASN][1000 genomes]
rs524301	0.95[ASN][1000 genomes]
rs529539	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs538712	0.90[ASN][1000 genomes]
rs539643	0.94[ASN][1000 genomes]
rs540454	0.95[ASN][1000 genomes]
rs549975	0.95[ASN][1000 genomes]
rs560627	0.95[ASN][1000 genomes]
rs568973	0.95[ASN][1000 genomes]
rs570638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs577142	0.99[ASN][1000 genomes]
rs581290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607120	0.95[ASN][1000 genomes]
rs608459	0.95[ASN][1000 genomes]
rs609308	0.95[ASN][1000 genomes]
rs611442	0.95[ASN][1000 genomes]
rs611503	0.95[ASN][1000 genomes]
rs612337	0.95[ASN][1000 genomes]
rs612856	0.95[ASN][1000 genomes]
rs613335	0.95[ASN][1000 genomes]
rs620373	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs620892	0.95[ASN][1000 genomes]
rs621903	0.95[ASN][1000 genomes]
rs623289	0.95[ASN][1000 genomes]
rs633234	0.95[ASN][1000 genomes]
rs641526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs641950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs642572	0.95[ASN][1000 genomes]
rs648653	0.95[ASN][1000 genomes]
rs650395	0.94[ASN][1000 genomes]
rs656300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs667763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73711542	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7783073	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7789787	0.95[ASN][1000 genomes]
rs7808081	0.95[ASN][1000 genomes]
rs961201	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83994600-84001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:83994800-84001200	Weak transcription	NHDF-Ad	bronchial
3	chr7:83999800-84001200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:84001000-84001200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:84001000-84001200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:84001000-84001200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:84001000-84001200	Enhancers	NH-A	brain
8	chr7:84001000-84001600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:84001000-84002600	Enhancers	NHLF	lung
10	chr7:84001000-84002600	Enhancers	Osteobl	bone

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