Variant report

Variant	rs17159120
Chromosome Location	chr7:111637938-111637939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111637130..111639282-chr7:111640957..111644072,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17159114	1.00[AMR][1000 genomes]
rs7791573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1028740	chr7:111227747-111679401	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111593600-111638200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:111600000-111645800	Weak transcription	Aorta	Aorta
3	chr7:111600000-111651000	Weak transcription	Psoas Muscle	Psoas
4	chr7:111611800-111650600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:111612000-111646000	Weak transcription	Fetal Brain Female	brain
6	chr7:111612000-111650400	Weak transcription	Right Ventricle	heart
7	chr7:111619800-111641200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:111620400-111643600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:111624400-111645200	Weak transcription	Brain Germinal Matrix	brain
10	chr7:111625400-111638200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:111625400-111638400	Weak transcription	Fetal Stomach	stomach
12	chr7:111625400-111649000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:111627400-111650600	Weak transcription	Fetal Brain Male	brain
14	chr7:111627800-111640000	Weak transcription	Hela-S3	cervix
15	chr7:111627800-111640800	Weak transcription	HMEC	breast
16	chr7:111627800-111645400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:111628000-111641000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:111628200-111641000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:111629000-111645000	Weak transcription	HepG2	liver
20	chr7:111629400-111643200	Weak transcription	Lung	lung
21	chr7:111629400-111644800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:111629400-111645600	Weak transcription	Left Ventricle	heart
23	chr7:111629400-111651000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:111629600-111645600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:111629600-111654000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:111631000-111641000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:111631200-111641000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:111631400-111642000	Weak transcription	Fetal Kidney	kidney
29	chr7:111632800-111638400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:111632800-111662000	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:111633200-111638200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:111633200-111640800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:111633200-111640800	Weak transcription	NH-A	brain
34	chr7:111633400-111638200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:111633600-111640800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:111634600-111641000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:111634600-111646800	Weak transcription	Ovary	ovary
38	chr7:111634800-111640800	Weak transcription	NHEK	skin
39	chr7:111634800-111644600	Weak transcription	Liver	Liver
40	chr7:111634800-111651600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr7:111634800-111652000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:111635000-111643600	Weak transcription	Fetal Lung	lung
43	chr7:111636200-111640800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:111636800-111638200	Enhancers	Brain Hippocampus Middle	brain
45	chr7:111636800-111639200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr7:111637000-111638600	Enhancers	Brain Anterior Caudate	brain
47	chr7:111637000-111638800	Enhancers	Brain Substantia Nigra	brain
48	chr7:111637200-111641000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:111637400-111638000	Weak transcription	HUVEC	blood vessel
50	chr7:111637600-111638600	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links