Variant report

Variant	rs17159121
Chromosome Location	chr7:84166793-84166794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84165408..84168410-chr7:84171249..84173353,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10488593	0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499881	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16887716	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16887718	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16887721	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16887725	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17159039	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17159042	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17159050	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159058	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159061	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159066	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159070	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17159073	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17159078	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17159080	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17159091	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17159100	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17159101	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17159104	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17159107	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17159110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159129	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17159163	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17159213	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17159219	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.91[ASN][1000 genomes]
rs1922347	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4475410	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4728557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732552	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4732553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4732554	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4732555	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4732556	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4732563	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57381320	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv888636	chr7:84117594-84334498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv607710	chr7:84137622-84168615	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv888637	chr7:84137622-84213008	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv464620	chr7:84141077-84289915	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv607711	chr7:84141077-84289915	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv888638	chr7:84158180-84334498	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv888639	chr7:84158180-84344258	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv5821	chr7:84159713-84204468	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1019542	chr7:84162664-84200815	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84164800-84166800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:84166000-84168800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:84166200-84168800	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:84166400-84169200	Enhancers	A549	lung

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