Variant report

Variant	rs17159640
Chromosome Location	chr7:112086333-112086334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17402962	0.90[AMR][1000 genomes]
rs2894646	0.83[AMR][1000 genomes]
rs3109106	0.83[AMR][1000 genomes]
rs3109108	0.83[AMR][1000 genomes]
rs3109116	0.87[AMR][1000 genomes]
rs3109117	0.87[AMR][1000 genomes]
rs3128395	0.87[AMR][1000 genomes]
rs6969176	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Mortality in heart failure	20400778	GWAS catalog

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:112083600-112089600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:112083800-112087600	Weak transcription	Pancreas	Pancrea
6	chr7:112083800-112090000	Weak transcription	Gastric	stomach
7	chr7:112084600-112089400	Weak transcription	GM12878-XiMat	blood
8	chr7:112084800-112086800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr7:112085800-112088800	Weak transcription	HepG2	liver
10	chr7:112086000-112087400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:112086000-112087400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:112086200-112089600	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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