Variant report

Variant	rs17159833
Chromosome Location	chr11:83961660-83961661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12808166	1.00[ASW][hapmap]
rs17734404	1.00[MKK][hapmap]
rs34623898	1.00[AFR][1000 genomes]
rs71469641	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83959200-83963200	Weak transcription	Brain Germinal Matrix	brain
2	chr11:83959400-83961800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83959600-83965000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83960200-83962400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:83960400-83962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83960800-83961800	Genic enhancers	Brain Anterior Caudate	brain
7	chr11:83961200-83961800	Genic enhancers	Brain Cingulate Gyrus	brain
8	chr11:83961200-83961800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:83961200-83963200	Weak transcription	Ovary	ovary
10	chr11:83961200-83964800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:83961400-83961800	Flanking Active TSS	Liver	Liver
12	chr11:83961400-83961800	Genic enhancers	Brain Angular Gyrus	brain
13	chr11:83961400-83961800	Genic enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:83961400-83962400	Enhancers	HepG2	liver
15	chr11:83961400-83964200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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