Variant report

Variant	rs17159946
Chromosome Location	chr11:86732171-86732172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11234918	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234992	0.85[CEU][hapmap]
rs11235013	0.85[CEU][hapmap]
rs12272397	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12282674	0.82[CEU][hapmap]
rs12283055	1.00[CEU][hapmap]
rs12284646	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17149645	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17149649	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17149657	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17149678	1.00[CEU][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17149716	1.00[CEU][hapmap]
rs17820920	0.82[CEU][hapmap]
rs4943967	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4943968	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4944656	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4944659	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4944660	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86728000-86732800	Enhancers	HepG2	liver
2	chr11:86730200-86732600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:86730600-86732600	Enhancers	HMEC	breast
4	chr11:86730800-86732200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:86730800-86732400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86730800-86732400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:86730800-86734000	Weak transcription	Right Atrium	heart
8	chr11:86731000-86732200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:86731000-86733400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:86731000-86733800	Weak transcription	Left Ventricle	heart
11	chr11:86731000-86733800	Weak transcription	Right Ventricle	heart
12	chr11:86731400-86732400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:86731400-86732400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:86731400-86732400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:86731400-86737800	Weak transcription	Fetal Heart	heart
16	chr11:86731800-86733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:86731800-86733400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:86731800-86748200	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:86732000-86732400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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