Variant report

Variant	rs17160248
Chromosome Location	chr7:103872115-103872116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103871788..103872679-chr7:103892569..103893462,4	MCF-7	breast:
2	chr7:103871818..103872475-chr7:103907890..103908480,2	MCF-7	breast:
3	chr7:103871547..103872530-chr7:104558465..104559716,7	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1018864	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10282501	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1989794	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4727590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv1029571	chr7:103855890-103909757	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv608066	chr7:103861035-103916484	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv429789	chr7:103862259-103909757	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103870800-103872400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:103871000-103872400	Enhancers	Fetal Brain Male	brain
3	chr7:103871000-103872400	Enhancers	Fetal Stomach	stomach
4	chr7:103871000-103872800	Enhancers	Fetal Lung	lung
5	chr7:103871600-103872400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:103871600-103872400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:103871600-103872400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:103871600-103872400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:103871600-103872400	Enhancers	Brain Substantia Nigra	brain
10	chr7:103871600-103872600	Enhancers	Ovary	ovary
11	chr7:103871800-103872200	Active TSS	Brain Germinal Matrix	brain
12	chr7:103871800-103872400	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr7:103871800-103872400	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:103871800-103872400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr7:103871800-103872400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:103871800-103872400	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr7:103871800-103872400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:103871800-103872400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr7:103871800-103872400	Enhancers	Gastric	stomach
20	chr7:103871800-103872400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr7:103871800-103872400	Enhancers	Stomach Mucosa	stomach
22	chr7:103871800-103872400	Bivalent Enhancer	Osteobl	bone
23	chr7:103872000-103872200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:103872000-103872200	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr7:103872000-103872200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
26	chr7:103872000-103872200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:103872000-103872200	Enhancers	Brain Hippocampus Middle	brain
28	chr7:103872000-103872200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr7:103872000-103872200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
30	chr7:103872000-103872400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr7:103872000-103872400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
32	chr7:103872000-103872400	Active TSS	Brain Angular Gyrus	brain
33	chr7:103872000-103872400	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:103872000-103872400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:103872000-103872400	Enhancers	Fetal Muscle Leg	muscle
36	chr7:103872000-103872800	Enhancers	Cortex derived primary cultured neurospheres	brain

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