Variant report

Variant	rs17160285
Chromosome Location	chr5:106968069-106968070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17160270	1.00[AMR][1000 genomes]
rs17160298	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73200637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106956000-106968200	Weak transcription	A549	lung
6	chr5:106962400-106969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:106962600-106969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:106963200-106969200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:106964600-106972400	Weak transcription	Fetal Heart	heart
10	chr5:106965600-106969000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:106965600-106969400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:106965800-106969000	Weak transcription	Esophagus	oesophagus
13	chr5:106966400-106968800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106966800-106979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:106967000-106972200	Weak transcription	Fetal Lung	lung
16	chr5:106967400-106970800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:106967400-106973200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:106967600-106968200	Enhancers	Dnd41	blood
19	chr5:106967600-106968400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:106967600-106968800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:106967600-106969000	Enhancers	NHDF-Ad	bronchial
22	chr5:106967600-106970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:106967800-106968800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:106967800-106969000	Weak transcription	Left Ventricle	heart
25	chr5:106967800-106969000	Weak transcription	GM12878-XiMat	blood
26	chr5:106968000-106968400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:106968000-106969000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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