Variant report

Variant	rs17160324
Chromosome Location	chr5:106984808-106984809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106971694..106973917-chr5:106984719..106987685,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17160301	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17160302	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
2	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106976600-106987200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
6	chr5:106979200-106985800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:106979400-106985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106979400-106988600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:106981800-106985800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:106982400-106985800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:106982400-106989000	Weak transcription	Stomach Mucosa	stomach
12	chr5:106982400-106990200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:106983200-106985200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106983600-106985400	Weak transcription	HMEC	breast
15	chr5:106983600-106990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:106983800-106989400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:106984400-106991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:106984600-106985000	Enhancers	A549	lung
19	chr5:106984600-106988000	Weak transcription	Fetal Lung	lung
20	chr5:106984800-106986000	Weak transcription	Fetal Heart	heart

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