Variant report

Variant	rs17160662
Chromosome Location	chr5:107176451-107176452
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11253	0.93[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12188414	0.92[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12189428	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs12515389	0.87[EUR][1000 genomes]
rs12519254	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs12519388	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12522548	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs12522552	0.93[CEU][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1368441	0.87[EUR][1000 genomes]
rs17160630	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17160676	0.87[EUR][1000 genomes]
rs17160677	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17369104	0.93[CEU][hapmap]
rs34990078	0.84[EUR][1000 genomes]
rs35343876	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57060622	0.87[EUR][1000 genomes]
rs61749621	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7716800	0.87[EUR][1000 genomes]
rs7718258	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17160662	FBXL17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107168000-107180200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107175200-107176600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107175200-107176600	Enhancers	Fetal Heart	heart
4	chr5:107175800-107176800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107176200-107176600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:107176200-107176600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:107176200-107176800	Enhancers	Fetal Thymus	thymus
8	chr5:107176400-107176600	Bivalent Enhancer	Left Ventricle	heart
9	chr5:107176400-107177200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links