Variant report

Variant	rs17160706
Chromosome Location	chr5:107228762-107228763
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11253	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs12188414	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs12189428	0.86[CEU][hapmap];0.90[MEX][hapmap]
rs12514884	0.90[YRI][hapmap]
rs12518124	0.84[ASW][hapmap];0.91[YRI][hapmap]
rs12519254	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[MEX][hapmap]
rs12519388	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs12520230	0.80[MEX][hapmap]
rs12522548	0.86[CEU][hapmap];0.90[MEX][hapmap]
rs12522552	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[MEX][hapmap]
rs13189604	0.91[YRI][hapmap]
rs17369104	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
4	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
5	chr5:107221800-107229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:107223600-107229000	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:107223600-107229400	Weak transcription	HUVEC	blood vessel
8	chr5:107223600-107229800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:107224400-107229400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:107226600-107229400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:107227600-107229800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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