Variant report

Variant	rs17160707
Chromosome Location	chr5:107229424-107229425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107224160..107226542-chr5:107227627..107229564,2	MCF-7	breast:
2	chr5:107223013..107225610-chr5:107226958..107229602,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10069370	0.94[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107223600-107229800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:107227600-107229800	Weak transcription	HSMM	muscle
5	chr5:107228800-107229600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107228800-107229600	Enhancers	NHDF-Ad	bronchial
7	chr5:107228800-107230400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:107229000-107229600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:107229000-107229600	Weak transcription	Aorta	Aorta
10	chr5:107229000-107229600	Enhancers	Colon Smooth Muscle	Colon
11	chr5:107229000-107229600	Enhancers	Osteobl	bone
12	chr5:107229000-107230200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:107229400-107229600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:107229400-107229600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:107229400-107229600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr5:107229400-107229800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:107229400-107230000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:107229400-107230200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:107229400-107230200	Enhancers	Adipose Nuclei	Adipose
20	chr5:107229400-107230200	Enhancers	HUVEC	blood vessel
21	chr5:107229400-107230400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr5:107229400-107230400	Enhancers	Fetal Lung	lung
23	chr5:107229400-107230400	Enhancers	HMEC	breast
24	chr5:107229400-107230400	Enhancers	NHEK	skin

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