Variant report

Variant	rs17161006
Chromosome Location	chr5:107436988-107436989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107436261..107438688-chr5:107440363..107442788,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17437183	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
4	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:107436000-107437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:107436400-107437000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:107436400-107437600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:107436400-107437800	Enhancers	Brain Anterior Caudate	brain
11	chr5:107436400-107437800	Enhancers	Brain Hippocampus Middle	brain
12	chr5:107436400-107437800	Enhancers	Brain Substantia Nigra	brain
13	chr5:107436600-107437200	Enhancers	Fetal Lung	lung
14	chr5:107436600-107437400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107436600-107437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:107436600-107437800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:107436600-107437800	Enhancers	Brain Angular Gyrus	brain
18	chr5:107436600-107437800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr5:107436600-107437800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:107436600-107439000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:107436800-107437200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:107436800-107437600	Weak transcription	Right Ventricle	heart
23	chr5:107436800-107438200	Enhancers	Brain Cingulate Gyrus	brain

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