Variant report

Variant	rs17161280
Chromosome Location	chr7:139642706-139642707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:139641847..139644053-chr7:139646879..139649393,2	MCF-7	breast:
2	chr7:139472264..139474363-chr7:139641675..139643292,2	K562	blood:
3	chr7:139634343..139637163-chr7:139642055..139644058,2	MCF-7	breast:
4	chr7:139636566..139638144-chr7:139641921..139644709,2	K562	blood:
5	chr7:139642517..139644523-chr7:139656724..139658712,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLEC2L-4	chr7:139639478-139646946	NONHSAT123657

No data

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17161283	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv889245	chr7:139599229-139657221	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139615400-139645000	Weak transcription	Primary T cells from cord blood	blood
2	chr7:139618600-139644800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:139634000-139656800	Weak transcription	Thymus	Thymus
4	chr7:139636800-139645400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:139636800-139645400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:139637600-139644800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:139638200-139645000	Weak transcription	Lung	lung
8	chr7:139638600-139645000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:139638600-139645600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:139638600-139645600	Weak transcription	Fetal Thymus	thymus
11	chr7:139640000-139644800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:139640200-139644200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:139640200-139644800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:139640400-139644800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:139641200-139643800	Weak transcription	K562	blood
16	chr7:139641600-139643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:139641800-139642800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr7:139642400-139642800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:139642400-139644200	Enhancers	Fetal Lung	lung
20	chr7:139642600-139643400	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links