Variant report

Variant	rs17161422
Chromosome Location	chr5:107993498-107993499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7730735	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107988800-107993600	Enhancers	Hela-S3	cervix
2	chr5:107990000-108006200	Weak transcription	Fetal Heart	heart
3	chr5:107992000-107996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:107992200-107997000	Weak transcription	NH-A	brain
5	chr5:107992600-107996600	Weak transcription	NHDF-Ad	bronchial
6	chr5:107992600-107996600	Weak transcription	NHLF	lung
7	chr5:107992600-107997200	Weak transcription	NHEK	skin
8	chr5:107993000-107993600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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