Variant report

Variant	rs17161444
Chromosome Location	chr7:139939889-139939890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139929780..139933692-chr7:139937205..139940372,4	MCF-7	breast:
2	chr7:139875299..139879163-chr7:139938303..139941745,4	MCF-7	breast:
3	chr7:139929755..139932903-chr7:139938921..139941351,3	K562	blood:

Variant related genes	Relation type
ENSG00000006459	Chromatin interaction
ENSG00000260231	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12672627	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17161447	0.89[JPT][hapmap]
rs2363103	0.93[ASN][1000 genomes]
rs57131680	0.93[ASN][1000 genomes]
rs57374036	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57644186	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58933720	1.00[ASN][1000 genomes]
rs61130821	0.93[ASN][1000 genomes]
rs73160867	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139931600-139941000	Weak transcription	Small Intestine	intestine
2	chr7:139931800-139942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:139933800-139941400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:139934000-139941600	Weak transcription	Primary B cells from cord blood	blood
5	chr7:139936800-139942600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:139937200-139942000	Weak transcription	Spleen	Spleen
7	chr7:139937800-139940200	Enhancers	Stomach Mucosa	stomach
8	chr7:139937800-139944000	Enhancers	Fetal Intestine Small	intestine
9	chr7:139937800-139944200	Enhancers	Fetal Intestine Large	intestine
10	chr7:139939000-139941600	Weak transcription	Pancreas	Pancrea
11	chr7:139939200-139940200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:139939200-139941800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:139939400-139942000	Enhancers	Colonic Mucosa	Colon
14	chr7:139939600-139941200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr7:139939600-139941600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:139939600-139941800	Weak transcription	Placenta	Placenta
17	chr7:139939600-139942000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:139939600-139942000	Enhancers	Duodenum Mucosa	Duodenum
19	chr7:139939800-139940400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:139939800-139940400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:139939800-139940800	Weak transcription	K562	blood
22	chr7:139939800-139941000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:139939800-139941000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:139939800-139941000	Weak transcription	Esophagus	oesophagus
25	chr7:139939800-139941000	Weak transcription	Gastric	stomach
26	chr7:139939800-139941200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr7:139939800-139942000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:139939800-139942000	Weak transcription	Left Ventricle	heart
29	chr7:139939800-139942200	Enhancers	HepG2	liver
30	chr7:139939800-139953400	Weak transcription	Lung	lung

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