Variant report

Variant	rs17161586
Chromosome Location	chr5:108360368-108360369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11958509	0.84[YRI][hapmap]
rs1427863	0.81[YRI][hapmap]
rs17161590	0.96[YRI][hapmap]
rs57971587	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv4952	chr5:108324146-108369353	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:108350800-108390400	Weak transcription	HSMMtube	muscle
3	chr5:108352400-108365000	Weak transcription	Fetal Intestine Large	intestine
4	chr5:108352400-108381400	Weak transcription	Fetal Lung	lung
5	chr5:108355200-108363800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:108356000-108399000	Weak transcription	HSMM	muscle
7	chr5:108356400-108364200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:108356400-108389200	Weak transcription	Primary B cells from cord blood	blood
9	chr5:108358000-108366400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:108358400-108366600	Weak transcription	Esophagus	oesophagus
11	chr5:108358800-108361800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:108359000-108360400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr5:108359200-108363600	Weak transcription	NHDF-Ad	bronchial
14	chr5:108359400-108360400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:108359400-108360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:108359400-108360600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:108359400-108360600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr5:108359600-108360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:108359800-108360400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr5:108359800-108360400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:108359800-108360400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:108359800-108360400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:108359800-108360400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr5:108359800-108360400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:108359800-108360400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:108359800-108360400	Strong transcription	Adipose Nuclei	Adipose
27	chr5:108359800-108360400	Strong transcription	Brain Angular Gyrus	brain
28	chr5:108359800-108360400	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr5:108359800-108360400	Strong transcription	Fetal Heart	heart
30	chr5:108359800-108360400	ZNF genes & repeats	Fetal Muscle Leg	muscle
31	chr5:108359800-108360400	ZNF genes & repeats	Left Ventricle	heart
32	chr5:108359800-108360400	ZNF genes & repeats	NHEK	skin
33	chr5:108359800-108360600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:108359800-108360600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:108359800-108360600	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr5:108360000-108360400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:108360000-108360400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:108360000-108360400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr5:108360000-108360400	ZNF genes & repeats	Aorta	Aorta
40	chr5:108360000-108360400	ZNF genes & repeats	Brain Anterior Caudate	brain
41	chr5:108360000-108360400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
42	chr5:108360000-108360400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:108360000-108360400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr5:108360000-108360400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr5:108360000-108360400	ZNF genes & repeats	Placenta	Placenta
46	chr5:108360000-108360400	ZNF genes & repeats	Fetal Stomach	stomach
47	chr5:108360000-108360400	ZNF genes & repeats	Lung	lung
48	chr5:108360000-108360400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
49	chr5:108360000-108360600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:108360000-108360600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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