Variant report

Variant	rs17161932
Chromosome Location	chr7:140827593-140827594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10215085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10258028	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763883	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768129	0.89[EUR][1000 genomes]
rs12666997	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12670630	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv971546	chr7:140806435-140830923	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140819200-140832400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:140819400-140832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:140819400-140832400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:140823400-140827800	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:140823400-140832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:140823600-140827800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:140823600-140827800	Weak transcription	HSMMtube	muscle
8	chr7:140823600-140831600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:140825800-140829600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:140826000-140830000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:140826600-140828200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:140826800-140828800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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