Variant report

Variant	rs17161942
Chromosome Location	chr11:71798979-71798980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71798957-71799481	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:71796837-71799431	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71789600..71791756-chr11:71798522..71801102,2	MCF-7	breast:
2	chr11:71735259..71738046-chr11:71798702..71801474,2	MCF-7	breast:
3	chr11:71743810..71760160-chr11:71777190..71805714,79	MCF-7	breast:
4	chr11:71792007..71794260-chr11:71797315..71799047,2	MCF-7	breast:
5	chr11:71779732..71781998-chr11:71797035..71799576,2	K562	blood:
6	chr11:71748762..71757629-chr11:71789138..71799261,28	MCF-7	breast:
7	chr11:71795514..71800060-chr11:71810684..71814982,4	MCF-7	breast:

No data

Variant related genes	Relation type
LRTOMT	TF binding region
ENSG00000184154	Chromatin interaction
ENSG00000206783	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000137497	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17161701	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs2276383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2276385	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs34075366	0.87[EUR][1000 genomes]
rs35844388	0.91[EUR][1000 genomes]
rs3750913	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3750914	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3763797	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4556571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55992367	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5743658	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs58589735	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59196647	0.88[AMR][1000 genomes]
rs59679718	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60963102	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61009003	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61696370	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61745941	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592461	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7103841	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7109253	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7109653	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7111712	0.83[EUR][1000 genomes]
rs7119711	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7129814	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72477716	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv825989	chr11:71798818-71799495	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792400-71799000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:71792400-71799000	Weak transcription	Left Ventricle	heart
3	chr11:71792400-71799200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:71792400-71799400	Weak transcription	Ovary	ovary
5	chr11:71792400-71802600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:71792400-71805200	Weak transcription	HSMMtube	muscle
7	chr11:71792400-71805800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:71792600-71799000	Weak transcription	Liver	Liver
9	chr11:71792600-71799200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:71792600-71799200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:71792600-71799200	Weak transcription	Osteobl	bone
12	chr11:71792600-71799400	Weak transcription	HSMM	muscle
13	chr11:71792600-71800800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:71792600-71802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:71792600-71802400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:71792600-71804200	Weak transcription	Aorta	Aorta
17	chr11:71792600-71804800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:71792600-71805400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:71792600-71805400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:71792600-71805400	Weak transcription	Colonic Mucosa	Colon
21	chr11:71792600-71805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:71792600-71805600	Weak transcription	Esophagus	oesophagus
23	chr11:71792600-71805600	Weak transcription	Pancreas	Pancrea
24	chr11:71792600-71808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:71792600-71809000	Weak transcription	Psoas Muscle	Psoas
26	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
27	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:71792800-71799000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:71792800-71799000	Weak transcription	Fetal Stomach	stomach
30	chr11:71792800-71799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:71792800-71799000	Weak transcription	Thymus	Thymus
32	chr11:71792800-71799400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:71792800-71801000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:71792800-71801000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:71792800-71801400	Weak transcription	HepG2	liver
36	chr11:71792800-71801800	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:71792800-71801800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:71792800-71802000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:71792800-71802000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:71792800-71802200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:71792800-71804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:71792800-71808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr11:71792800-71808200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:71793000-71799400	Weak transcription	Spleen	Spleen
45	chr11:71793000-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:71793200-71799000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:71793200-71799200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:71793200-71799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:71793200-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:71793400-71799000	Weak transcription	Lung	lung

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