Variant report

Variant	rs17161943
Chromosome Location	chr7:140861232-140861233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140858519..140860294-chr7:140860342..140863117,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11768129	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12670630	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140845600-140861400	Weak transcription	Fetal Brain Female	brain
2	chr7:140850600-140861600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:140852000-140864000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:140853800-140863600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:140854400-140861400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:140854400-140861600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:140855600-140861600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:140856600-140864400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:140857600-140863400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:140858400-140862400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:140858800-140861800	Enhancers	Fetal Brain Male	brain
12	chr7:140859000-140862800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:140859000-140865000	Weak transcription	Fetal Lung	lung
14	chr7:140859400-140861400	Weak transcription	HSMMtube	muscle
15	chr7:140860000-140861800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:140860200-140862800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:140861000-140861600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:140861000-140862200	Enhancers	Esophagus	oesophagus
19	chr7:140861200-140861400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:140861200-140862400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:140861200-140862600	Enhancers	HMEC	breast

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