Variant report

Variant	rs17162056
Chromosome Location	chr11:71906244-71906245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12417459	0.92[CHB][hapmap]
rs12417751	0.83[CHB][hapmap]
rs1540087	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17162064	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17162069	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3763796	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7109250	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113391	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7125189	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71892000-71906600	Weak transcription	Esophagus	oesophagus
2	chr11:71901200-71907000	Weak transcription	Pancreas	Pancrea
3	chr11:71903400-71908400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:71903600-71906400	Active TSS	Hela-S3	cervix
5	chr11:71903600-71906600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:71903600-71906600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:71903600-71907000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:71903600-71909800	Weak transcription	Lung	lung
9	chr11:71906200-71907400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:71906200-71912200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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