Variant report

Variant	rs17163999
Chromosome Location	chr7:11188976-11188977
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:11179754..11182412-chr7:11187476..11189973,2	K562	blood:
2	chr7:11187936..11191247-chr7:11191383..11194500,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10487898	1.00[YRI][hapmap]
rs10499379	1.00[ASN][1000 genomes]
rs16876779	1.00[YRI][hapmap]
rs17149834	1.00[YRI][hapmap]
rs17163895	1.00[YRI][hapmap]
rs17163898	1.00[YRI][hapmap]
rs17163919	1.00[YRI][hapmap]
rs17163973	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17163995	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2301961	1.00[YRI][hapmap]
rs3801434	1.00[YRI][hapmap]
rs3801439	1.00[YRI][hapmap]
rs3801440	1.00[YRI][hapmap]
rs3801443	1.00[YRI][hapmap]
rs3801456	1.00[YRI][hapmap]
rs6945159	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv887602	chr7:11071993-11220846	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv428162	chr7:11085784-11359333	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
14	nsv830901	chr7:11093455-11272219	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv916426	chr7:11095057-11201696	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv887603	chr7:11104985-11231727	Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	nsv606195	chr7:11140383-11216782	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
18	nsv606196	chr7:11144030-11255948	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
19	nsv1029654	chr7:11147593-11263834	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
20	nsv538731	chr7:11147593-11263834	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11057800-11190200	Weak transcription	Fetal Brain Male	brain
2	chr7:11076400-11193200	Weak transcription	Ovary	ovary
3	chr7:11102200-11189200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:11102600-11190400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:11103000-11189000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr7:11107600-11212200	Weak transcription	Fetal Kidney	kidney
7	chr7:11113200-11211800	Weak transcription	Fetal Intestine Large	intestine
8	chr7:11114600-11210000	Weak transcription	Fetal Brain Female	brain
9	chr7:11118000-11199000	Weak transcription	HSMM	muscle
10	chr7:11144600-11191000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:11148000-11192200	Weak transcription	Fetal Stomach	stomach
12	chr7:11149200-11191200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:11156400-11209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:11157000-11192600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:11157000-11199600	Weak transcription	Fetal Lung	lung
16	chr7:11161800-11190200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:11167400-11194600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:11167800-11190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:11168200-11208800	Weak transcription	Primary T cells from cord blood	blood
20	chr7:11168400-11189600	Weak transcription	Fetal Thymus	thymus
21	chr7:11169000-11208800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:11170200-11195200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:11170600-11217400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:11170800-11198200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:11170800-11199400	Weak transcription	Psoas Muscle	Psoas
26	chr7:11170800-11199800	Weak transcription	Primary B cells from cord blood	blood
27	chr7:11173400-11199600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:11174800-11190200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:11175400-11199600	Weak transcription	Left Ventricle	heart
30	chr7:11175400-11206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:11175400-11213200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:11175600-11194000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:11175800-11189200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:11175800-11201400	Weak transcription	A549	lung
35	chr7:11178000-11194400	Weak transcription	Fetal Intestine Small	intestine
36	chr7:11180000-11210400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:11183600-11208800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:11183800-11193000	Weak transcription	Hela-S3	cervix
39	chr7:11184000-11191400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:11184800-11200200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:11187600-11189200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr7:11187800-11189000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:11188000-11190000	Strong transcription	Dnd41	blood
44	chr7:11188200-11190400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:11188200-11208400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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