Variant report

Variant	rs17164132
Chromosome Location	chr5:112152920-112152921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112152202..112156283-chr5:112195630..112198484,4	MCF-7	breast:
2	chr5:111908035..111909669-chr5:112150477..112152951,2	K562	blood:

Variant related genes	Relation type
ENSG00000153037	Chromatin interaction
ENSG00000272869	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10515446	0.83[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap]
rs11555908	1.00[JPT][hapmap]
rs11950612	0.82[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12189	0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1613148	0.88[ASN][1000 genomes]
rs1644240	0.80[ASN][1000 genomes]
rs17135070	0.81[CHD][hapmap]
rs17135100	0.81[CHD][hapmap]
rs17135108	0.81[CHD][hapmap]
rs17135149	0.81[CHD][hapmap]
rs17135155	0.81[CHD][hapmap]
rs1734242	0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2304793	0.83[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2707761	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3733961	1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs3733963	0.81[CHD][hapmap]
rs3822654	0.86[CHD][hapmap]
rs6650981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885768	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6891448	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6899169	0.98[ASN][1000 genomes]
rs7703438	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7706623	0.91[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap]
rs7707339	0.89[ASN][1000 genomes]
rs7712157	0.80[ASN][1000 genomes]
rs7712303	0.80[ASN][1000 genomes]
rs7712537	0.80[ASN][1000 genomes]
rs7728109	1.00[JPT][hapmap]
rs7728216	0.80[ASN][1000 genomes]
rs918397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112093400-112183800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:112103000-112173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:112104600-112155400	Weak transcription	Psoas Muscle	Psoas
4	chr5:112118200-112155600	Weak transcription	Right Ventricle	heart
5	chr5:112118200-112177000	Weak transcription	Colonic Mucosa	Colon
6	chr5:112129000-112154600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:112129000-112157400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:112129400-112163800	Weak transcription	Small Intestine	intestine
9	chr5:112129600-112163600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:112129800-112154800	Weak transcription	NH-A	brain
11	chr5:112130600-112154800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:112130600-112155400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:112130600-112155600	Weak transcription	Fetal Heart	heart
14	chr5:112130800-112154800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:112130800-112155400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:112131800-112157800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:112131800-112164000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:112132000-112154800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:112132000-112174000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:112132200-112155200	Weak transcription	Fetal Brain Male	brain
21	chr5:112132800-112179800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:112133400-112154800	Weak transcription	HepG2	liver
23	chr5:112133600-112160800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:112133600-112161400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:112134000-112153600	Weak transcription	NHDF-Ad	bronchial
26	chr5:112134000-112162800	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:112136600-112176200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr5:112137000-112154800	Weak transcription	HUVEC	blood vessel
29	chr5:112140400-112183800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:112141400-112162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:112143600-112159800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:112144200-112159800	Strong transcription	HSMM	muscle
33	chr5:112145400-112165600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:112145600-112156600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:112146200-112165800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:112147400-112153400	Weak transcription	Fetal Lung	lung
37	chr5:112147800-112154600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr5:112147800-112154600	Weak transcription	Esophagus	oesophagus
39	chr5:112147800-112154800	Weak transcription	Brain Germinal Matrix	brain
40	chr5:112147800-112154800	Weak transcription	Fetal Kidney	kidney
41	chr5:112147800-112154800	Weak transcription	HSMMtube	muscle
42	chr5:112147800-112155200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr5:112147800-112155600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr5:112148200-112153400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:112149000-112163600	Weak transcription	A549	lung
46	chr5:112149400-112176400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr5:112149800-112156400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:112149800-112157800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:112149800-112159400	Strong transcription	Adipose Nuclei	Adipose
50	chr5:112149800-112159800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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