Variant report

Variant	rs17164384
Chromosome Location	chr4:1161480-1161481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:196)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:196 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr4:1160929-1161620	K562	blood:	n/a	n/a
2	MAZ	chr4:1160568-1162014	IMR90	lung:	n/a	chr4:1160594-1160605 chr4:1160595-1160604 chr4:1161615-1161624 chr4:1160594-1160605
3	SIN3AK20	chr4:1159401-1161758	PFSK-1	brain:	n/a	n/a
4	RAD21	chr4:1160741-1161766	HCT-116	colon:	n/a	n/a
5	MAX	chr4:1160993-1161691	H1-hESC	embryonic stem cell:	n/a	chr4:1161615-1161624
6	ELF1	chr4:1161308-1161710	K562	blood:	n/a	n/a
7	STAT5A	chr4:1160660-1161581	GM12878	blood:	n/a	n/a
8	CTCF	chr4:1160633-1161789	SK-N-SH	brain:	n/a	chr4:1161755-1161768
9	POLR2A	chr4:1160957-1161488	IMR90	lung:	n/a	n/a
10	POLR2A	chr4:1160975-1161779	NB4	blood:	n/a	n/a
11	POLR2A	chr4:1161222-1161744	GM12891	blood:	n/a	n/a
12	POLR2A	chr4:1160847-1161941	K562	blood:	n/a	n/a
13	GABPA	chr4:1160944-1161589	H1-hESC	embryonic stem cell:	n/a	n/a
14	IRF1	chr4:1161027-1161744	K562	blood:	n/a	chr4:1161540-1161554
15	TBP	chr4:1160893-1161698	K562	blood:	n/a	n/a
16	SMC3	chr4:1160859-1161867	GM12878	blood:	n/a	n/a
17	POLR2A	chr4:1161005-1161782	GM12892	blood:	n/a	n/a
18	RCOR1	chr4:1160891-1161762	K562	blood:	n/a	n/a
19	CREB1	chr4:1160911-1161771	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr4:1161441-1161647	Spleen_OC	spleen:	n/a	n/a
21	ZMIZ1	chr4:1160994-1161612	K562	blood:	n/a	n/a
22	POLR2A	chr4:1161033-1161953	H1-hESC	embryonic stem cell:	n/a	n/a
23	TCF7L2	chr4:1161011-1161711	HCT-116	colon:	n/a	n/a
24	EP300	chr4:1160969-1161860	GM12878	blood:	n/a	n/a
25	POLR2A	chr4:1160972-1161729	GM18526	blood:	n/a	n/a
26	GTF2F1	chr4:1161099-1161527	K562	blood:	n/a	n/a
27	PML	chr4:1160735-1161842	GM12878	blood:	n/a	n/a
28	MYC	chr4:1161450-1161609	MCF-7	breast:	n/a	n/a
29	RCOR1	chr4:1160929-1161799	GM12878	blood:	n/a	n/a
30	ZBTB7A	chr4:1160979-1161667	K562	blood:	n/a	n/a
31	POLR2A	chr4:1160938-1161709	GM12878	blood:	n/a	n/a
32	MAX	chr4:1160815-1161922	ECC-1	luminal epithelium:	n/a	chr4:1161615-1161624
33	RAD21	chr4:1160758-1161724	SK-N-SH	brain:	n/a	n/a
34	SMC3	chr4:1160920-1161631	K562	blood:	n/a	n/a
35	MYC	chr4:1160484-1161826	NB4	blood:	n/a	chr4:1160594-1160605 chr4:1160595-1160604 chr4:1161615-1161624 chr4:1160594-1160605
36	POLR2A	chr4:1160954-1161670	K562	blood:	n/a	n/a
37	POLR2A	chr4:1160963-1161813	HCT-116	colon:	n/a	n/a
38	ELF1	chr4:1160788-1161880	GM12878	blood:	n/a	n/a
39	POLR2A	chr4:1160844-1161753	GM15510	blood:	n/a	n/a
40	TAF1	chr4:1161016-1161667	H1-hESC	embryonic stem cell:	n/a	n/a
41	RFX5	chr4:1161079-1161793	GM12878	blood:	n/a	chr4:1161609-1161626 chr4:1161613-1161627 chr4:1161615-1161624 chr4:1161610-1161625 chr4:1161610-1161625
42	POLR2A	chr4:1161006-1161679	K562	blood:	n/a	n/a
43	POLR2A	chr4:1160855-1161706	GM19193	blood:	n/a	n/a
44	STAT1	chr4:1160979-1161667	GM12878	blood:	n/a	n/a
45	TBL1XR1	chr4:1160913-1161945	GM12878	blood:	n/a	n/a
46	SIN3AK20	chr4:1161440-1161862	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr4:1160769-1161483	A549	lung:	n/a	n/a
48	HCFC1	chr4:1161043-1161702	K562	blood:	n/a	n/a
49	POLR2A	chr4:1161057-1161808	HEK293	kidney:	n/a	n/a
50	EP300	chr4:1161030-1161872	GM12878	blood:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:1148836..1150656-chr4:1158742..1161485,3	K562	blood:
2	chr4:1161114..1165211-chr4:1166165..1170804,4	MCF-7	breast:
3	chr19:2269356..2269867-chr4:1160687..1161536,2	NB4	blood:
4	chr4:1124107..1124994-chr4:1160647..1161547,3	K562	blood:
5	chr4:1157936..1161506-chr4:1282339..1285236,6	K562	blood:
6	chr4:1159229..1162099-chr4:1242725..1245069,2	K562	blood:
7	chr4:1159882..1162594-chr4:1225934..1228487,2	MCF-7	breast:
8	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
9	chr4:1160924..1165328-chr4:1340425..1343058,5	MCF-7	breast:
10	chr4:1160724..1161481-chr4:1208619..1209214,2	K562	blood:
11	chr4:1005928..1008320-chr4:1161466..1163793,2	MCF-7	breast:
12	chr4:1161085..1161655-chrX:63425593..63426536,2	NB4	blood:
13	chr4:1146501..1148469-chr4:1159921..1162668,2	MCF-7	breast:
14	chr4:1160471..1164177-chr4:1164804..1166602,3	K562	blood:
15	chr4:1159479..1162008-chr4:1166717..1168665,3	MCF-7	breast:
16	chr4:1159747..1163015-chr4:1240558..1244483,3	K562	blood:
17	chr4:1159320..1162756-chr4:1282339..1286135,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000273179	TF binding region
ENSG00000184675	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000127418	Chromatin interaction
ENSG00000196810	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000215367	Chromatin interaction
ENSG00000104904	Chromatin interaction
ENSG00000159674	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10002248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003030	0.87[ASW][hapmap];0.81[LWK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs10014245	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016588	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs10027895	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029139	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032470	0.88[CEU][hapmap]
rs10033163	0.88[CEU][hapmap]
rs11247974	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724989	0.88[CEU][hapmap]
rs11726554	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731643	0.88[AFR][1000 genomes]
rs11731685	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732057	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734374	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119696	1.00[CEU][hapmap]
rs13435166	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383660	0.88[CEU][hapmap]
rs1481167	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs28540372	0.83[AFR][1000 genomes]
rs28578449	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28621675	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28785628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855974	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28856334	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924495	0.88[CEU][hapmap]
rs3775111	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs4246684	0.88[CEU][hapmap]
rs4974561	1.00[CEU][hapmap]
rs4974569	0.88[CEU][hapmap]
rs4974571	0.88[CEU][hapmap]
rs4974573	0.88[CEU][hapmap]
rs4974628	0.88[CEU][hapmap]
rs4974639	0.88[CEU][hapmap]
rs4974642	0.88[CEU][hapmap]
rs4974643	0.88[CEU][hapmap]
rs4974644	0.88[CEU][hapmap]
rs588824	0.88[CEU][hapmap]
rs589660	0.88[CEU][hapmap]
rs59465697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604526	0.85[CEU][hapmap]
rs606327	0.88[CEU][hapmap]
rs608066	0.86[CEU][hapmap]
rs614945	0.88[CEU][hapmap]
rs615381	0.88[CEU][hapmap]
rs616569	0.88[CEU][hapmap]
rs619407	0.88[CEU][hapmap]
rs620398	0.88[CEU][hapmap]
rs629638	0.88[CEU][hapmap]
rs632319	0.88[CEU][hapmap]
rs633087	0.88[CEU][hapmap]
rs633141	0.88[CEU][hapmap]
rs633599	0.88[CEU][hapmap]
rs633954	0.88[CEU][hapmap]
rs643043	1.00[CEU][hapmap]
rs649243	0.88[CEU][hapmap]
rs649616	0.88[CEU][hapmap]
rs6599282	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs6599283	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs6599284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6599285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671790	0.88[CEU][hapmap]
rs6812059	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817989	0.88[CEU][hapmap]
rs681857	0.88[CEU][hapmap]
rs682243	0.88[CEU][hapmap]
rs682787	0.88[CEU][hapmap]
rs6831018	0.84[AFR][1000 genomes]
rs6836158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839768	0.88[CEU][hapmap]
rs6840162	0.88[CEU][hapmap]
rs73065688	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73065696	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065698	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73067706	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73067775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73067776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73219741	1.00[ASN][1000 genomes]
rs7659054	0.90[MEX][hapmap]
rs7661069	0.81[ASW][hapmap];0.90[MEX][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs7669287	0.87[ASW][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs7676956	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678661	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685051	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878324	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9992322	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1003876	chr4:927509-1191316	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1000381	chr4:927509-1198766	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1005990	chr4:1015652-1167619	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv1012892	chr4:1086871-1176630	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
11	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
12	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv519106	chr4:1158991-1174861	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv593276	chr4:1159680-1227469	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
16	nsv461151	chr4:1159680-1236840	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	nsv593277	chr4:1159680-1236840	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
18	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
19	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
20	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17164384	ADD1	cis	cerebellum	SCAN
rs17164384	RNF212	cis	parietal	SCAN
rs17164384	LOC348926	cis	parietal	SCAN
rs17164384	RNF212	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1160400-1163400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:1160600-1162000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:1160800-1161600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:1160800-1161600	Active TSS	Brain Cingulate Gyrus	brain
5	chr4:1160800-1161600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr4:1160800-1161800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr4:1160800-1161800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr4:1160800-1161800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr4:1160800-1161800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:1160800-1161800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:1160800-1161800	Active TSS	Rectal Smooth Muscle	rectum
12	chr4:1160800-1162000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr4:1160800-1162000	Flanking Active TSS	Liver	Liver
14	chr4:1160800-1162000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr4:1161000-1161600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:1161000-1161600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:1161000-1161600	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr4:1161000-1161600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:1161000-1161600	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr4:1161000-1161600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr4:1161000-1161600	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr4:1161000-1161600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr4:1161000-1161600	Active TSS	Brain Substantia Nigra	brain
24	chr4:1161000-1161600	Active TSS	Colon Smooth Muscle	Colon
25	chr4:1161000-1161600	Active TSS	Fetal Intestine Large	intestine
26	chr4:1161000-1161600	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
27	chr4:1161000-1161600	Active TSS	Psoas Muscle	Psoas
28	chr4:1161000-1161600	Flanking Active TSS	HSMM	muscle
29	chr4:1161000-1161600	Active TSS	HSMMtube	muscle
30	chr4:1161000-1161600	Active TSS	NHEK	skin
31	chr4:1161000-1161800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr4:1161000-1161800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:1161000-1161800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:1161000-1161800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
35	chr4:1161000-1161800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:1161000-1161800	Active TSS	Primary T cells from cord blood	blood
37	chr4:1161000-1161800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:1161000-1161800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr4:1161000-1161800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:1161000-1161800	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr4:1161000-1161800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:1161000-1161800	Active TSS	Fetal Brain Female	brain
43	chr4:1161000-1161800	Flanking Bivalent TSS/Enh	Placenta	Placenta
44	chr4:1161000-1161800	Flanking Active TSS	Fetal Thymus	thymus
45	chr4:1161000-1161800	Active TSS	Gastric	stomach
46	chr4:1161000-1161800	Active TSS	Right Atrium	heart
47	chr4:1161000-1162000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:1161000-1162000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
49	chr4:1161000-1162000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr4:1161000-1162000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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