Variant report

Variant	rs17164752
Chromosome Location	chr5:126931510-126931511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10491250	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17164824	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17164828	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17164854	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17839687	0.92[EUR][1000 genomes]
rs3885906	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126921400-126936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:126922200-126939200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:126926200-126931600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:126926400-126931600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:126930000-126933200	Enhancers	Primary T cells from cord blood	blood
6	chr5:126930600-126933400	Enhancers	Fetal Thymus	thymus
7	chr5:126930800-126931600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:126930800-126931800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:126931000-126931800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:126931200-126931600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:126931400-126932000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:126931400-126932200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:126931400-126932400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links