Variant report

Variant	rs17164805
Chromosome Location	chr7:11605832-11605833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1023525	0.86[JPT][hapmap]
rs10240343	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10240511	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1034739	0.88[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap]
rs10428944	0.85[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486153	0.84[GIH][hapmap];0.91[MEX][hapmap]
rs10486155	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12112423	0.86[ASW][hapmap];0.93[CEU][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12112567	1.00[ASW][hapmap];0.93[CEU][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12113763	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12699205	0.85[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12699206	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12699208	0.93[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12699223	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699224	0.86[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699225	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699233	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12699235	0.81[ASN][1000 genomes]
rs12699236	0.87[AMR][1000 genomes]
rs12699238	0.94[CHB][hapmap];0.93[CHD][hapmap];0.90[ASN][1000 genomes]
rs12699240	0.80[CHD][hapmap]
rs12699241	0.80[CHD][hapmap]
rs12699242	0.80[CHD][hapmap]
rs12699246	0.80[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap]
rs13228651	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13240026	0.83[CHD][hapmap]
rs17164736	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]
rs17164737	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs17164738	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs17164739	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs17634217	0.86[JPT][hapmap]
rs2040816	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2040817	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2072139	1.00[ASW][hapmap];0.93[CEU][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2074605	0.93[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2074606	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2074607	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2107144	0.86[JPT][hapmap]
rs2158260	0.86[JPT][hapmap]
rs2214590	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2214591	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2354953	0.86[JPT][hapmap]
rs2883564	0.93[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35025590	0.94[ASN][1000 genomes]
rs35833899	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4291151	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4443556	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4443557	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4504531	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4571634	0.86[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67541992	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6942629	0.93[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946819	0.86[JPT][hapmap]
rs6958901	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6964073	0.85[JPT][hapmap]
rs6968824	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6972615	0.86[JPT][hapmap]
rs6975510	0.88[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs739754	0.86[JPT][hapmap]
rs739755	0.84[ASW][hapmap];0.86[JPT][hapmap]
rs739756	0.84[ASW][hapmap];0.86[JPT][hapmap]
rs739758	0.84[ASW][hapmap]
rs757217	0.84[JPT][hapmap]
rs757218	0.84[ASW][hapmap];0.86[JPT][hapmap]
rs764195	0.84[GIH][hapmap];0.91[MEX][hapmap]
rs7788442	0.84[CHD][hapmap]
rs7790988	0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7792687	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7792827	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7804875	0.86[JPT][hapmap]
rs7805116	1.00[ASW][hapmap];0.87[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7811211	0.86[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
2	chr7:11602800-11606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:11605400-11606000	Enhancers	Liver	Liver
4	chr7:11605400-11606200	Enhancers	A549	lung

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