Variant report

Variant	rs17164840
Chromosome Location	chr7:11626048-11626049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10229585	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10241518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10265301	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10271276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10273150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10280808	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10280951	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10486150	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12334075	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1557878	0.96[ASN][1000 genomes]
rs17164850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1989990	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1989991	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2214589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5027108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs62432834	0.92[ASN][1000 genomes]
rs62432836	0.92[ASN][1000 genomes]
rs62432838	0.92[ASN][1000 genomes]
rs62432854	0.92[ASN][1000 genomes]
rs62432855	0.92[ASN][1000 genomes]
rs62432856	0.92[ASN][1000 genomes]
rs62434461	0.92[ASN][1000 genomes]
rs62434462	1.00[ASN][1000 genomes]
rs62434463	1.00[ASN][1000 genomes]
rs62434464	1.00[ASN][1000 genomes]
rs62434466	1.00[ASN][1000 genomes]
rs62434471	1.00[ASN][1000 genomes]
rs62434474	1.00[ASN][1000 genomes]
rs62434493	1.00[ASN][1000 genomes]
rs62434496	1.00[ASN][1000 genomes]
rs62434497	1.00[ASN][1000 genomes]
rs62434501	1.00[ASN][1000 genomes]
rs62434503	1.00[ASN][1000 genomes]
rs62434504	1.00[ASN][1000 genomes]
rs62434505	1.00[ASN][1000 genomes]
rs62434506	1.00[ASN][1000 genomes]
rs62434507	1.00[ASN][1000 genomes]
rs62434523	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434525	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945973	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6957991	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7455869	0.92[ASN][1000 genomes]
rs7458209	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7781076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11617600-11634000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:11619000-11634400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:11619200-11633400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:11623200-11633000	Weak transcription	Placenta	Placenta
5	chr7:11623800-11632800	Weak transcription	Liver	Liver
6	chr7:11624000-11631600	Weak transcription	Fetal Brain Male	brain
7	chr7:11624600-11632000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:11625000-11626400	Weak transcription	Fetal Heart	heart
9	chr7:11625400-11629000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links