Variant report

Variant	rs17165119
Chromosome Location	chr5:126617387-126617388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519929	1.00[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs10519930	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs11949382	0.83[EUR][1000 genomes]
rs12109330	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17165102	0.93[EUR][1000 genomes]
rs17165103	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17165105	1.00[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs4293963	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126616200-126617400	Enhancers	Pancreas	Pancrea
2	chr5:126616600-126617600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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