Variant report

Variant	rs17165369
Chromosome Location	chr7:11951687-11951688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11761534	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11772691	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17165372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv887619	chr7:11893588-12043231	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv887620	chr7:11908763-11993510	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1021077	chr7:11914098-11960462	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887622	chr7:11916354-11965352	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv464369	chr7:11931567-11962120	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv606216	chr7:11931567-11962120	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv606217	chr7:11932891-11962120	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv887623	chr7:11932891-11971329	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv606218	chr7:11938060-12000154	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv887624	chr7:11941048-12023864	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11951200-11951800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:11951200-11952400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:11951400-11951800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:11951400-11951800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:11951400-11951800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:11951400-11952000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:11951400-11952000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:11951400-11952200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:11951600-11952000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:11951600-11952000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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