Variant report

Variant	rs17166325
Chromosome Location	chr7:12762235-12762236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12730530..12732171-chr7:12760743..12762407,2	K562	blood:
2	chr7:12725321..12728768-chr7:12759702..12762917,3	K562	blood:

Variant related genes	Relation type
ENSG00000122644	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34524203	0.86[ASN][1000 genomes]
rs4721131	0.81[GIH][hapmap];0.82[MKK][hapmap]
rs6460976	0.81[GIH][hapmap]
rs6949193	0.81[GIH][hapmap];0.82[MKK][hapmap]
rs9691887	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv830907	chr7:12661239-12818250	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv830908	chr7:12695007-12870475	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	esv2422346	chr7:12739291-12883550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv887641	chr7:12747443-12782062	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12755800-12763000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr7:12756200-12768800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:12756400-12762400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:12756400-12770800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:12756600-12770800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:12756800-12766000	Weak transcription	Right Ventricle	heart
7	chr7:12756800-12766800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:12758000-12770800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:12759000-12765400	Weak transcription	Left Ventricle	heart
10	chr7:12759000-12766800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:12759200-12770200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:12759200-12771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:12759600-12766600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:12760000-12768800	Weak transcription	HSMMtube	muscle
15	chr7:12760000-12768800	Weak transcription	NHEK	skin
16	chr7:12760200-12764600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:12760400-12765600	Weak transcription	Placenta	Placenta
18	chr7:12760400-12770600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:12760400-12770800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:12760600-12767800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:12760800-12762600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:12760800-12763200	Enhancers	Fetal Intestine Small	intestine
23	chr7:12761200-12767000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:12761600-12763200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr7:12761600-12763400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:12761600-12763400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr7:12761600-12763400	Enhancers	Fetal Brain Male	brain
28	chr7:12761600-12763400	Flanking Active TSS	K562	blood
29	chr7:12761800-12762400	Enhancers	Right Atrium	heart
30	chr7:12761800-12762600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:12761800-12762600	Enhancers	Stomach Mucosa	stomach
32	chr7:12761800-12763000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr7:12761800-12763000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr7:12761800-12763000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr7:12761800-12763000	Enhancers	A549	lung
36	chr7:12761800-12763200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:12761800-12763200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr7:12761800-12763200	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr7:12761800-12763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:12761800-12763200	Enhancers	Fetal Intestine Large	intestine
41	chr7:12761800-12763400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:12761800-12763400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:12762000-12765200	Weak transcription	Psoas Muscle	Psoas
44	chr7:12762200-12762400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr7:12762200-12762800	Enhancers	Small Intestine	intestine
46	chr7:12762200-12763000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:12762200-12763000	Enhancers	Fetal Kidney	kidney
48	chr7:12762200-12763400	Enhancers	Skeletal Muscle Male	skeletal muscle

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