Variant report
Variant | rs17166694 |
---|---|
Chromosome Location | chr5:98447943-98447944 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:12069041..12070712-chr5:98447812..98450049,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000048471 | Chromatin interaction |
ENSG00000234719 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11959108 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17166616 | 0.93[ASN][1000 genomes] |
rs17166641 | 0.93[ASN][1000 genomes] |
rs17166644 | 0.91[ASN][1000 genomes] |
rs17166656 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs17166666 | 0.95[ASN][1000 genomes] |
rs2166721 | 0.93[ASN][1000 genomes] |
rs2166722 | 0.93[ASN][1000 genomes] |
rs59099039 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs726431 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs7715722 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7720227 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv882417 | chr5:98428184-98548315 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv482367 | chr5:98440337-98606909 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv882418 | chr5:98447682-98694849 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |