Variant report

Variant	rs17167772
Chromosome Location	chr7:14062031-14062032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10454309	1.00[AFR][1000 genomes]
rs16878059	1.00[AFR][1000 genomes]
rs17167686	1.00[EUR][1000 genomes]
rs17167689	1.00[EUR][1000 genomes]
rs17167732	1.00[AFR][1000 genomes]
rs17167746	1.00[AFR][1000 genomes]
rs17167783	1.00[AFR][1000 genomes]
rs17167784	1.00[AFR][1000 genomes]
rs17167806	1.00[AFR][1000 genomes]
rs17167809	1.00[AFR][1000 genomes]
rs17167812	1.00[AFR][1000 genomes]
rs17167842	1.00[AFR][1000 genomes]
rs17167848	1.00[AFR][1000 genomes]
rs17167853	1.00[AFR][1000 genomes]
rs2079353	1.00[AFR][1000 genomes]
rs2190063	1.00[AFR][1000 genomes]
rs35291842	1.00[AFR][1000 genomes]
rs3919485	1.00[AFR][1000 genomes]
rs58567888	1.00[AFR][1000 genomes]
rs60718708	1.00[AFR][1000 genomes]
rs9639173	1.00[AFR][1000 genomes]
rs9639174	1.00[AFR][1000 genomes]
rs9639175	1.00[AFR][1000 genomes]
rs9639176	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14050200-14070800	Weak transcription	K562	blood
2	chr7:14061200-14062400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:14061200-14062800	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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