Variant report
| Variant | rs17167824 |
|---|---|
| Chromosome Location | chr7:14104517-14104518 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10225078 | 0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10454309 | 0.81[ASN][1000 genomes] |
| rs11972061 | 0.89[EUR][1000 genomes] |
| rs11978961 | 0.91[EUR][1000 genomes] |
| rs11984113 | 0.90[EUR][1000 genomes] |
| rs16878059 | 0.82[ASN][1000 genomes] |
| rs17167746 | 1.00[JPT][hapmap] |
| rs17167750 | 0.86[CHD][hapmap];1.00[JPT][hapmap] |
| rs17167783 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17167784 | 0.88[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs17167800 | 0.87[CHD][hapmap] |
| rs17167806 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17167809 | 0.92[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs17167812 | 0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2158664 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2190063 | 0.88[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3919485 | 0.81[ASN][1000 genomes] |
| rs57877652 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6975287 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6975910 | 0.90[EUR][1000 genomes] |
| rs73266063 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73266065 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73266069 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73266071 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7797625 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015312 | chr7:14092753-14266917 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14102800-14106600 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
