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Variant report
Variant
rs17168136
Chromosome Location
chr7:14436761-14436762
allele
A/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:6)
rs_ID
r
2
[population]
rs10259349
0.96[YRI][hapmap];0.92[AMR][1000 genomes]
rs10273965
0.85[AMR][1000 genomes]
rs11971288
1.00[MEX][hapmap]
rs17167979
1.00[MEX][hapmap]
rs17168162
1.00[MEX][hapmap]
rs2195753
1.00[MEX][hapmap]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv949033
chr7:14086106-14860323
Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer
TF binding regionCpG islandChromatin interactive regionlncRNA
8 gene(s)
inside rSNPs
diseases
2
nsv606281
chr7:14388381-14443963
Weak transcription Flanking Active TSS Enhancers Active TSS
n/a
n/a
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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