Variant report

Variant	rs17168158
Chromosome Location	chr7:14458976-14458977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1431529	1.00[AMR][1000 genomes]
rs16878175	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17168156	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17168162	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168164	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168178	1.00[AMR][1000 genomes]
rs2067697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679792	1.00[AMR][1000 genomes]
rs73679796	1.00[AMR][1000 genomes]
rs73679800	1.00[AMR][1000 genomes]
rs73682412	1.00[AMR][1000 genomes]
rs7780462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3376984	chr7:14456877-14459100	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14454200-14462400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14458000-14459600	Enhancers	Fetal Heart	heart
3	chr7:14458200-14459600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:14458200-14459800	Enhancers	Fetal Lung	lung
5	chr7:14458400-14459400	Weak transcription	Fetal Intestine Small	intestine
6	chr7:14458400-14459800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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