Variant report

Variant	rs17168865
Chromosome Location	chr7:136683212-136683213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10242859	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs1424547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17168866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17168868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs421325	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136666400-136685400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:136674800-136694200	Weak transcription	Left Ventricle	heart
3	chr7:136678400-136685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:136681400-136683800	Enhancers	NHLF	lung
5	chr7:136681800-136684000	Enhancers	HSMMtube	muscle
6	chr7:136682400-136683600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:136682400-136684800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr7:136682600-136683800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:136682600-136685800	Weak transcription	NH-A	brain
10	chr7:136682800-136685400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:136683000-136683400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:136683000-136683600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:136683000-136684600	Weak transcription	Fetal Heart	heart
14	chr7:136683000-136685400	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:136683200-136683600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:136683200-136685800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:136683200-136685800	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links