Variant report

Variant	rs17169033
Chromosome Location	chr7:136968621-136968622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10247519	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10251438	0.85[JPT][hapmap]
rs12668246	0.85[JPT][hapmap]
rs12671280	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13245564	1.00[JPT][hapmap]
rs2242045	0.85[JPT][hapmap]
rs6977749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6977819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136952200-136971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:136961400-136973600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:136961400-136980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:136965800-136969600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:136967600-136969600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:136968000-136973600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:136968200-136970600	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:136968200-136971600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:136968200-136971600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:136968400-136969200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:136968400-136971800	Weak transcription	Brain Angular Gyrus	brain
13	chr7:136968400-136971800	Weak transcription	Brain Substantia Nigra	brain
14	chr7:136968600-136971400	Weak transcription	Brain Anterior Caudate	brain
15	chr7:136968600-136989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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