Variant report

Variant	rs17169178
Chromosome Location	chr7:16013462-16013463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10486788	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12668133	0.81[EUR][1000 genomes]
rs12669397	0.81[EUR][1000 genomes]
rs12674430	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12699760	0.80[EUR][1000 genomes]
rs13234986	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13236237	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13239842	0.81[EUR][1000 genomes]
rs17169192	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34090708	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34482481	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6948282	0.81[EUR][1000 genomes]
rs9969139	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024621	chr7:16009368-16030199	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16011800-16013600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:16012000-16014400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:16012200-16013800	Enhancers	HUVEC	blood vessel
4	chr7:16012800-16013600	Enhancers	Adipose Nuclei	Adipose
5	chr7:16013200-16013600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:16013200-16014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:16013200-16017000	Weak transcription	Osteobl	bone
8	chr7:16013200-16017400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:16013200-16017400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:16013200-16017400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:16013200-16017400	Weak transcription	NHDF-Ad	bronchial
12	chr7:16013400-16016800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:16013400-16017200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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