Variant report

Variant	rs17169455
Chromosome Location	chr7:137629413-137629414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137627790..137630235-chr7:137645055..137648680,3	K562	blood:
2	chr7:137620870..137622447-chr7:137627955..137630199,2	K562	blood:
3	chr7:137627223..137629575-chr7:137685502..137688202,2	K562	blood:
4	chr7:137627051..137629539-chr7:137676163..137677717,2	K562	blood:

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10229718	1.00[EUR][1000 genomes]
rs10242255	1.00[CEU][hapmap]
rs10254813	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10257051	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263198	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274570	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56384334	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60078042	0.83[AMR][1000 genomes]
rs73729525	0.83[EUR][1000 genomes]
rs73729526	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73729527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656495	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137615600-137635600	Weak transcription	Hela-S3	cervix
2	chr7:137618200-137637200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:137621200-137638000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:137621800-137633800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:137622200-137636600	Weak transcription	Esophagus	oesophagus
8	chr7:137622200-137638200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:137622400-137638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:137624200-137633400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:137625800-137637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:137625800-137638200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:137626000-137629800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137626000-137632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:137626000-137637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:137626000-137637000	Weak transcription	NHEK	skin
18	chr7:137626000-137646200	Weak transcription	HMEC	breast
19	chr7:137626400-137630800	Weak transcription	Gastric	stomach
20	chr7:137626400-137631800	Weak transcription	Lung	lung
21	chr7:137626400-137637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:137626400-137637400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:137626800-137631400	Enhancers	Stomach Smooth Muscle	stomach
24	chr7:137627400-137638200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:137627600-137629600	Enhancers	Osteobl	bone
26	chr7:137627800-137629600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr7:137627800-137630200	Enhancers	HepG2	liver
28	chr7:137627800-137630800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:137627800-137632200	Weak transcription	Right Ventricle	heart
30	chr7:137628200-137632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:137628200-137637800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:137628400-137630600	Weak transcription	Aorta	Aorta
33	chr7:137628400-137635200	Weak transcription	GM12878-XiMat	blood
34	chr7:137628600-137631200	Genic enhancers	K562	blood
35	chr7:137628600-137632600	Weak transcription	Right Atrium	heart
36	chr7:137628600-137633800	Weak transcription	Left Ventricle	heart
37	chr7:137628600-137637200	Weak transcription	Colonic Mucosa	Colon
38	chr7:137628800-137629600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:137628800-137632600	Weak transcription	Psoas Muscle	Psoas
40	chr7:137628800-137636400	Weak transcription	Ovary	ovary
41	chr7:137628800-137636600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:137628800-137638600	Weak transcription	HUVEC	blood vessel
43	chr7:137629000-137630000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:137629000-137630800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:137629000-137631800	Weak transcription	Small Intestine	intestine
46	chr7:137629000-137633200	Weak transcription	Fetal Heart	heart
47	chr7:137629000-137633600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:137629000-137634800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:137629000-137638000	Weak transcription	Adipose Nuclei	Adipose
50	chr7:137629200-137630400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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