Variant report

Variant	rs17169473
Chromosome Location	chr7:137664678-137664679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137659697..137661457-chr7:137662836..137664690,2	K562	blood:
2	chr7:137635530..137638649-chr7:137663904..137666002,3	MCF-7	breast:
3	chr7:137658346..137659869-chr7:137662763..137665002,2	K562	blood:
4	chr7:137663152..137665522-chr7:137685261..137687180,3	MCF-7	breast:
5	chr7:137658632..137660691-chr7:137663264..137665632,2	MCF-7	breast:
6	chr7:137664650..137666249-chr7:137684725..137687963,3	MCF-7	breast:
7	chr7:137609953..137612415-chr7:137663430..137666120,2	K562	blood:

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000237243	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13235479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35730195	0.94[ASN][1000 genomes]
rs6948572	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137651400-137675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:137652200-137672200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:137652600-137672600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:137652800-137669800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:137652800-137670000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:137652800-137674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:137652800-137674800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:137652800-137677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:137654000-137674200	Weak transcription	NHEK	skin
10	chr7:137655600-137665800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:137655600-137667000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:137655800-137665600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:137655800-137666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:137656400-137665600	Weak transcription	Colonic Mucosa	Colon
15	chr7:137658600-137664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:137658600-137670200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:137659200-137666600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr7:137659200-137675200	Enhancers	Adipose Nuclei	Adipose
19	chr7:137659400-137665400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:137659400-137670000	Genic enhancers	HepG2	liver
21	chr7:137660000-137666000	Enhancers	NH-A	brain
22	chr7:137660400-137666600	Weak transcription	Fetal Intestine Large	intestine
23	chr7:137661200-137667200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:137661200-137668000	Weak transcription	Liver	Liver
25	chr7:137661400-137679400	Enhancers	Placenta	Placenta
26	chr7:137661600-137665200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr7:137661800-137665600	Strong transcription	Fetal Intestine Small	intestine
28	chr7:137662000-137664800	Enhancers	Duodenum Mucosa	Duodenum
29	chr7:137662000-137667200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:137662000-137667600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:137662200-137667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:137662200-137671200	Weak transcription	Thymus	Thymus
33	chr7:137662400-137665800	Enhancers	Stomach Smooth Muscle	stomach
34	chr7:137662600-137665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:137662600-137667200	Enhancers	HSMMtube	muscle
36	chr7:137663000-137665600	Enhancers	Small Intestine	intestine
37	chr7:137663000-137666200	Enhancers	Right Ventricle	heart
38	chr7:137663000-137666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:137663000-137667200	Enhancers	Gastric	stomach
40	chr7:137663200-137666200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:137663200-137666800	Enhancers	Aorta	Aorta
42	chr7:137663200-137667200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr7:137663200-137667400	Enhancers	Left Ventricle	heart
44	chr7:137663400-137671200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:137663600-137665000	Weak transcription	Fetal Lung	lung
46	chr7:137663600-137665000	Weak transcription	Psoas Muscle	Psoas
47	chr7:137663600-137665200	Weak transcription	Spleen	Spleen
48	chr7:137663600-137670000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:137663800-137665000	Weak transcription	Lung	lung
50	chr7:137663800-137665200	Weak transcription	Esophagus	oesophagus

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