Variant report

Variant	rs17171441
Chromosome Location	chr7:38722499-38722500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10499611	0.85[TSI][hapmap]
rs11984273	0.80[ASN][1000 genomes]
rs17171446	0.85[TSI][hapmap]
rs62442613	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38696000-38726000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:38721000-38722800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:38721200-38723000	Enhancers	Fetal Heart	heart
4	chr7:38721600-38722800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:38721800-38722600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:38721800-38722800	Enhancers	Right Ventricle	heart
7	chr7:38721800-38723000	Enhancers	Fetal Brain Male	brain
8	chr7:38721800-38723000	Enhancers	Fetal Muscle Leg	muscle
9	chr7:38721800-38723000	Enhancers	Left Ventricle	heart
10	chr7:38721800-38723000	Enhancers	Ovary	ovary
11	chr7:38721800-38723200	Enhancers	Fetal Lung	lung
12	chr7:38722200-38723000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:38722200-38723200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:38722200-38733800	Weak transcription	Right Atrium	heart
15	chr7:38722400-38723000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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