Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1229047	0.94[EUR][1000 genomes]
rs17171484	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17171485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17171489	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2392612	0.94[EUR][1000 genomes]
rs35054698	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4276581	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4307243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4376417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4507665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6979541	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs859524	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38967800-38970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:38967800-38970800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:38968000-38969600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:38968600-38969800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:38968800-38969200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:38968800-38969200	Enhancers	Pancreas	Pancrea
7	chr7:38968800-38969600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:38968800-38969800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:38968800-38969800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:38969000-38969400	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:38969000-38969400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:38969000-38969600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:38969000-38969800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:38969000-38969800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:38969000-38969800	Enhancers	Fetal Brain Male	brain
16	chr7:38969000-38969800	Enhancers	K562	blood
17	chr7:38969000-38969800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr7:38969000-38970200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:38969000-38970200	Enhancers	HSMMtube	muscle
20	chr7:38969000-38970200	Enhancers	HUVEC	blood vessel

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